PeptidePedia The community reference

Reverse-phase HPLC (revision 10)

Old revision·11:01, 12 Oct 2024·StubSorterBot

This is an old revision of this page, as it stood at 11:01, 12 Oct 2024, saved by StubSorterBot with the summary bot: flag bare reference. It may differ substantially from the current revision, and any error it contains may since have been corrected.
Reverse-phase HPLC
048121620main peak 12.4 min · 98.7 area%mAUminutes
AbbreviationRP-HPLC
Stationary phaseAlkyl chains bonded to silica, usually C18
Mobile phaseWater and acetonitrile with an acidic modifier
DetectionUV at 214 nm; sometimes 280 nm
Analytical method infobox · conventions

Reverse-phase HPLC is the mode of liquid chromatography in which the stationary phase is non-polar and the mobile phase is polar — the reverse of the normal-phase arrangement from which the name derives. It is the dominant analytical technique for peptides and the source of almost every purity figure on a peptide certificate.[1]

Separation follows hydrophobicity. A peptide adsorbs to the alkyl stationary phase from a largely aqueous mobile phase and desorbs as the organic proportion rises; the organic content at which it desorbs is characteristic and reproducible under fixed conditions.[2]

An acidic modifier — most often trifluoroacetic acid — is added to suppress ionisation of acidic side chains and to pair with basic ones, sharpening peaks considerably. Its use is why peptides purified by this route emerge as trifluoroacetate salts.[3]

Conditions and what they control

[edit]
ParameterTypical valueWhat it changes
Column chemistryC18, sometimes C8 or C4Retention strength; C4 for large or very hydrophobic peptides
Particle size1.7–5 μmEfficiency and back-pressure
Modifier0.1% trifluoroacetic acidPeak shape; ion pairing
Gradient5–60% acetonitrileElution window and resolution
Gradient duration15–60 minResolution of close-eluting species
Temperature25–60 °CSelectivity, peak shape, viscosity
Detection214 nmSensitivity to the peptide bond

Gradient duration is the parameter with the largest effect on a reported purity figure. A shallow gradient run over an hour resolves species a fifteen-minute gradient merges, and the merged determination returns a higher number on identical material. Neither is wrong; they are different measurements. See Purity claim inflation.[2]

Temperature is the parameter most often omitted from certificates. Elevated column temperature sharpens peaks for large peptides by reducing conformational heterogeneity, and a method developed at 60 °C will not reproduce at ambient.

References

  1. ^ United States Pharmacopeia, General Chapter <621>, Chromatography.
  2. ^ a b Mant CT, Hodges RS. "Analysis of peptides by high-performance liquid chromatography." Methods in Enzymology 271:3–50 (1996). PMID 8782429.
  3. ^ United States Pharmacopeia, General Chapter <1503>, Quality Attributes of Synthetic Peptide Drug Substances.